PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020469.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 1083aa    MW: 116935 Da    PI: 7.7949
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020469.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.32.5e-17815864255
                 HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  Do020469.1 815 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 864
                 889*************************9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513756.149335365IPR002885Pentatricopeptide repeat
PfamPF015350.38340366IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.525366400IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0017368401IPR002885Pentatricopeptide repeat
PfamPF015350.011368395IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.13401435IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.181469503IPR002885Pentatricopeptide repeat
PfamPF130412.8E-10469518IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.108.9E-4470499IPR011990Tetratricopeptide-like helical domain
TIGRFAMsTIGR007561.3E-6472498IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.259506540IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.108.9E-4538601IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.673541571IPR002885Pentatricopeptide repeat
PfamPF015350.063546569IPR002885Pentatricopeptide repeat
PfamPF130414.6E-13574620IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.121574608IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.7E-8576609IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.092609644IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.588645675IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.108.9E-4707731IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513756.796713747IPR002885Pentatricopeptide repeat
Gene3DG3DSA:4.10.280.101.8E-23810885IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-18811881IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.78813863IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-15815864IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.36E-16815868No hitNo description
SMARTSM003532.6E-13819869IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1083 aa     Download sequence    Send to blast
MCCWRRRRGV YVPPRAGVGA GGPIGNFLKT HDFLQPWEKP GAVPSPAFGA DDSSHHQQPV  60
ALPLPGGIGT FTISPAPVSV ARPAAAVVKA EPPFVLWGQP AALQPVARGA GHQQQWALPF  120
AGAGQAGPSP PDRKGRGGGG GGGRAMESGS RSSGGAGFDD DDGLAARREV SSSLQVFRVG  180
LAELTVRKRT GSVEGMSSHA PTAPGTGGSQ WQPAQVHQLH AHLLVSGRLL GSPTIAALAL  240
LRAACRVSAS PCLRPLARHL LDEIPHPPPQ LLHAAARLAS RLRLPSLTLC HYLALRARHP  300
GFLPPAPAIA DVLKSVPGRA AHAHALRVAT HAVDARFLDN TLIAMYFACG NAWSARQVFE  360
GMRDRDVVSW TSLISGLVQN GCPLQGLRHF ASMMHSEVCP DFVLLVSVLK AYMELDDLPG  420
ATAAHSLVVK SGFDNELDVV ITLTSMYAKF GCIVAARALF DRVPTPRVNV ILWNAMISGY  480
SKNGLANEAV QLFKQMRKVA RSMIPDSVTL RSVILACAQL GSVELAEWME DYVQGSEYRD  540
DVLVNTALID MYSKAGSIAR AHTVFERMQV QVRDVVVWSA LIGGYGVHGH FKEAVALFEE  600
MKNAGVKPND VTFLGLLSAC NHVGAVEKGW SYFHSMKHDY GIEPRHQHYA CVVDLLARAG  660
HLDRAYQFIK DMPIKPEMSV WGALLHGCKM HGHSDMALAE CAAQHIFELE HSNAGHYVQL  720
ANLYASVGMW SQVAGVRVTM RERGVSKATG CSSIDINGEL HSFHAGDHSH PRAAEIFALL  780
SLLSPTPAGE LTVRMDRKGG SCSDGGMDQR PNTPRSKHSA TEQRRRSKIN DRFQILRELL  840
PHSDQKRDKA TFLLEVIEYI RFLQEKVQKY EATFPEWNQE NAKMLPWSKE QIPGDSLPVP  900
SHFMRNGSSP GSNFTGKLDD NHNTVTYAAA SGAQDQAETD HMASVCDRSV ETPANITNNA  960
LSQSQPQWTG PSPVNDCAVN EMLNNQQLAI DEGTISISSQ YSQELLNSLT HALQSSGVDL  1020
SEASISVQIN LGKRAVKRPA ADVPSKEPTD PASSDEIDHQ LAMLGGGAED LSHAAKRQKP  1080
GNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9f_A2e-3534069815404pentatricopeptide repeat protein dPPR-U10
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135143RGGGGGGGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0676940.0BT067694.1 Zea mays full-length cDNA clone ZM_BFc0130K07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699577.10.0PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like
TrEMBLA0A0E0ET420.0A0A0E0ET42_9ORYZ; Uncharacterized protein
STRINGOB09G20380.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-61BES1-interacting Myc-like protein 2